FCPX 11.1. 'Overwrite to Primary Storyline' Problem

I've upgraded to FCPX 11.1. I have a complex 2 hour timeline with up to 10 layers. Now I want to share the project, flattening the timeline for use in Post House. 'Overwrite to Primary Storyline' seems to have replaced the command 'Clean Up to Primary Storyline' - it used to erase/ignore disabled clips. But now any disabled clips in the upper layer overwrite enabled clips under them as a blank screen on the timeline. This is a total nightmare. What used to take seconds might involve many hours of manually deleting disabled clips. And I'd have to do this each time I share. How do I solve?

Posted on Sep 8, 2025 4:25 AM

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10 replies

Sep 8, 2025 6:08 AM in response to Future_Joe

I would still share the xml without flattening, but setting that aside: as you are, very sensibly, working on a copy of project, and want to flatten the timeline, at this point it seems that the course of action might be to delete any disabled clip that is at least partially “visible” when flattening occurs.


By the way, the xml needs to be converted afterwards, which makes me think if it may make sense to just export a master file in ProRes instead.

Sep 8, 2025 8:34 AM in response to Future_Joe

I had a chance to try this now (I was away from my Mac before).


The behavior that I see with Overwrite to Primary Storyline is (IMO) correct.

When you select some connected clips and choose the command to overwrite, the selected clips overwrite whatever is below and in the primary.

An example: clips B and C are selected and connected to the primary; B is disabled



Pressing Command-Option-DownArrow (or selecting Clip->Overwrite to Primary Storyline) we get:



The clips B and C overwrite whatever was below; and B is still disabled, as before running the command.


If I understood correctly, you would like disabled clips to be ignored, resulting instead (in this example) in



as if clip B had been nonexistent.


As far as I can tell, this is not the expected behavior, nor have I seen it work this way in previous versions (but I admit that this is not a command that I tend to use often).

Sep 8, 2025 4:57 AM in response to Future_Joe

I don’t understand why you’d need to “flatten the project” in the first place… this is a destructive action: you can’t restore (unless if you immediately Undo) the project to its previous state.

Can you elaborate on what requirements led you to this unusual process?


Also, as far as I can tell, overwrite to primary storyline has not changed its behavior. It does what it says… overwrite.

Sep 8, 2025 5:19 AM in response to Luis Sequeira1

Thanks. I need to export an XML to be used in Avid, and I want to simplify the timeline so there is just a single layer with all the linked shots. Yes it's destructive but I'd just duplicate the project first. The problem is that in the new version of FCPX disabled clips are treated as 'blank' clips - so anywhere in the layers where there are disabled clips above the required enabled clip, I have a black screen in my timeline. Older versions of FCPX had a different command - one that 'cleaned up' all your layers. This seems to be a serious problem in the update?


Sep 8, 2025 9:10 AM in response to Luis Sequeira1

Thanks both, yes, this shows the problem. I have at least 10 layers covering 2 hours (it's a multicam shoot) and I have created an edit that involves hundreds of cuts and hundreds of disabled clips. (They are disabled so that I can revert to using them if required and it keeps my layering easy to understand). There was an older command 'Clean Up to Primary Storyline'. I want to share a XML/AAF of the project to someone using a different platform, but it will involve deleting by hand hundreds of disabled clips. It will take many hours. Several years ago my FCPX allowed me to 'clean up' to primary storyline: In one command overwriting everything to a single layer showing just the visible clips.

Sep 9, 2025 11:29 PM in response to Future_Joe

But now any disabled clips in the upper layer overwrite enabled clips under them as a blank screen on the timeline.

That's correct behavior. Please understand that FCP's concept of "disable" when organizing the timeline is different from the "disable" concept used by the V key.


Three clips, ABC, are layered on the timeline. B is invalid with V key


The area that FCP considers invalid is framed in red.


All clips have been overwritten on the timeline.

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FCPX 11.1. 'Overwrite to Primary Storyline' Problem

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