There is no getting away from using USB interface. The fact is it's an efficient way to add functionality and capability to any computer. Yes, more devices mean more potential points of failure, but there's just no way to build into a computer all of the functionality that all users might like to have.
The best we can do is buy quality devices and cables and demand from all manufacturers that they build their wares to high standards.
It's always best to use appropriate cables from point-to-point rather than add adapters to the chain.
I don't disagree that older Macs had some nice hardware features like the analog+digital optical headphone outputs and separate audio lines-in for example. But I do enjoy the advances in processing power and portability of the newest Macs. I'd say the trade offs are worth it.